Data download
Deposit Western diet-Standard diet data: GSE156059
Deposit Liver Atlas data: GSE192742
Scripts Liver Atlas data: github.com/guilliottslab
NOTE: the gene-cell count matrices contain all genes and all cells before any quality control filtering was done.
The cell annotation matrices contain the cells that were retained after QC filtering.
The cell annotation matrices contain the cells that were retained after QC filtering.
NOTE: adt-CLEC4F and adt-VSIG4 are custom Abs and their names got swapped in the CellRanger output.
To get the expression of adt-VSIG4, you need to look at adt-CLEC4F. To see the expression of adt-CLEC4F, please look at adt-VSIG4.
To get the expression of adt-VSIG4, you need to look at adt-CLEC4F. To see the expression of adt-CLEC4F, please look at adt-VSIG4.
Western diet - Standard diet
Liver Cell Atlas: Human
Liver Cell Atlas: Mouse StSt
| # | Sample | Gene-cell count matrix | Cell annotation matrix | Cite-Seq FCS file |
|---|---|---|---|---|
| 1 | All liver cells | Download | Download | Download |
| 2 | Myeloid cells | Download | Download | Download |
| 3 | Lymphoid cells | Download | Download | Download |
| 4 | CD45- cells | Download | Download | Download |
| 5 | Fibroblasts | Download | Download | |
| 6 | Visium spatial | Download | Download | |
| 7 | Visium spatial with ABs | Download | Download | |
| 8 | KC1 vs KC2 | Download | Download |
Liver Cell Atlas: Mouse NAFLD
Liver Cell Atlas: Other species
Liver Cell Atlas: Digest protocols
Liver Cell Atlas: 10x Visium Loupe files
Liver Cell Atlas: 10x Visium Full resolution images
Liver Cell Atlas: sample info
Liver Cell Atlas: MACSima data
The MACSima data is here available for download.
Liver Cell Atlas: Resolve data
The Resolve data is here available for download.